PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008241478.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 417aa    MW: 45533.8 Da    PI: 6.0143
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008241478.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH512.6e-16162208455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn+ E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  XP_008241478.1 162 VHNMSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 208
                     6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-20155219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-20155218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.873158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.05E-17161212No hitNo description
PfamPF000101.1E-13162208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-18164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MGDTHDHYYK NATYSSSPSA SVSPAAAAAP AQPPSTSDEI SLFLQQILLR SSSSLASVAA  60
HTGKAPQFLF SSSPSVAALP DHLSRPCHSM FLGDGITAVD SSASLMPAGN PNVSSSSFGA  120
SENETDEYDC ESEEGLEALV EEAAGKPGCG RSSSKRSRAA EVHNMSEKRR RSRINEKMKA  180
LQNLIPNSNK TDKASMLDEA IEYLKQLQLQ VQMLSMRNGM SLHPMCLPGA LQPVQLSQMR  240
MDLGEENRPL HLDMTGTPLM NQESPTQNLF HFSNQCTNAN QSYVPDMSNV VNSETSFGLE  300
SSMQAHLGPF QLPNSSEEIC REDMLQHQQI NVNHSETNPF EFELGATARV SLSFNTQVSD  360
LKGSSSLGAC ITGRNRQEGL LLKAMKQNFH IDSMLTGRRR VANDNIKTER RHTYDAC
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1812700.0GU181270.1 Prunus persica ALCATRAZ/SPATULA-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241478.10.0PREDICTED: transcription factor SPATULA isoform X1
SwissprotQ9FUA43e-65SPT_ARATH; Transcription factor SPATULA
TrEMBLA0A0U2RXV10.0A0A0U2RXV1_9R
STRINGVIT_07s0031g00450.t011e-130(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.19e-58bHLH family protein